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  5. Transcript_contig_78617

Transcript_contig_78617 (78617)


Aliases : 78617

Description : Hypothetical protein


Gene families : OG_01_0000696 (OrthoFinder) Phylogenetic Tree(s): OG0000696_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78617
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.82 tig00000403_g342.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre03.g161800 30788217 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cz01g25050.t1 No alias Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.07 OrthoFinder
EOD09279 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.04 OrthoFinder
EOD09280 No alias von Willebrand factor, type A [Interproscan]. 0.02 OrthoFinder
OT_01G04150.1 No alias Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.02 OrthoFinder
PTI_27G01500.1 No alias Midasin, AAA lid domain 7; Midasin AAA lid domain 5;... 0.01 OrthoFinder
Transcript_contig_65064 65064 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.02 OrthoFinder
Transcript_contig_9424 9424 Hypothetical protein 0.01 OrthoFinder
XM_003061925.1 MicpuC2_21219, 21219 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.01 OrthoFinder
lcl|BLLF01000887.1_cds_GFH15697.1_10174 HaLaN_11972, GFH15697 Midasin 0.01 OrthoFinder
lcl|BLLF01000887.1_cds_GFH15699.1_10176 HaLaN_11975, GFH15699 Midasin, AAA lid domain 7; ATPase, dynein-related, AAA... 0.02 OrthoFinder
lcl|BLLF01000887.1_cds_GFH15702.1_10179 HaLaN_11979, GFH15702 ATPase, dynein-related, AAA domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001463.1_cds_GFH19437.1_13914 HaLaN_16383, GFH19437 Midasin 0.01 OrthoFinder
lcl|BLLF01004642.1_cds_GFH30001.1_24478 HaLaN_28767, GFH30001 VWFA domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497714.1_6667 KAA8497714 Midasin 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!