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  5. Transcript_contig_78467

Transcript_contig_78467 (78467)


Aliases : 78467

Description : Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S] iron-sulphur domain [Interproscan].


Gene families : OG_01_0001581 (OrthoFinder) Phylogenetic Tree(s): OG0001581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78467
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.19 tig00000970_g5838.t1 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.03 OrthoFinder
Cz13g12160.t1 No alias Rieske [2Fe-2S] iron-sulphur domain; Cytochrome B6-F... 0.01 OrthoFinder
Dusal.0155s00020.1 33194766 Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S]... 0.01 OrthoFinder
Dusal.0155s00021.1 33194774 Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S]... 0.01 OrthoFinder
EOD22449 No alias Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S]... 0.01 OrthoFinder
OT_01G06660.1 No alias Rieske [2Fe-2S] iron-sulphur domain; Cytochrome B6-F... 0.03 OrthoFinder
PTI_11G00460.1 No alias Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S]... 0.01 OrthoFinder
TP02G07910.1 No alias Cytochrome B6-F complex Fe-S subunit; Rieske [2Fe-2S]... 0.01 OrthoFinder
Vocar.0009s0349.1 32893192 Rieske [2Fe-2S] iron-sulphur domain; Cytochrome B6-F... 0.02 OrthoFinder
XM_002506874.1 MICPUN_88922, 88922 Cytochrome b6/f complex iron-sulfur subunit, chloroplast... 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50973.1_1020 PRW50973 Cytochrome b6 f complex iron-sulfur chloroplast precursor 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491834.1_4842 KAA8491834 Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004834 tryptophan synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006568 tryptophan metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006586 indolalkylamine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0042430 indole-containing compound metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR017941 Rieske_2Fe-2S 118 177
No external refs found!