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  5. Transcript_contig_78387

Transcript_contig_78387 (78387)


Aliases : 78387

Description : tRNA synthetases class I, catalytic domain [Interproscan].


Gene families : OG_01_0001653 (OrthoFinder) Phylogenetic Tree(s): OG0001653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78387
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.46 tig00000194_g14774.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder
EOD06158 No alias tRNA synthetases class I, catalytic domain [Interproscan]. 0.01 OrthoFinder
OT_03G05180.1 No alias tRNA synthetases class I, catalytic domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1094.6 1094.6 tRNA synthetases class I, catalytic domain [Interproscan]. 0.01 OrthoFinder
XM_003062710.1 MicpuC2_22077, 22077 tRNA synthetases class I, catalytic domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000909.1_cds_GFH15847.1_10324 HaLaN_12155, GFH15847 TRNA-synt_1e domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR032678 tRNA-synt_1_cat_dom 43 459
No external refs found!