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  5. Transcript_contig_78386

Transcript_contig_78386 (78386)


Aliases : 78386

Description : GTP binding domain; Guanine nucleotide-binding protein-like 3, N-terminal domain [Interproscan].


Gene families : OG_01_0000912 (OrthoFinder) Phylogenetic Tree(s): OG0000912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78386
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.42 tig00000194_g14770.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cre07.g340050 30774278 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre12.g533050 30793617 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cz05g00180.t1 No alias Guanine nucleotide-binding protein-like 3, N-terminal... 0.09 OrthoFinder
Cz09g14040.t1 No alias Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.11 OrthoFinder
Dusal.0016s00027.1 33193057 Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.02 OrthoFinder
Dusal.2360s00001.1 33203466 GTP binding domain [Interproscan]. 0.01 OrthoFinder
EOD09428 No alias Hypothetical protein [Ensembl]. 0.07 OrthoFinder
EOD36669 No alias Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.05 OrthoFinder
OT_06G01820.1 No alias GTP binding domain; Guanine nucleotide-binding... 0.1 OrthoFinder
OT_08G02180.1 No alias Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.05 OrthoFinder
PTI_02G00050.1 No alias Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.09 OrthoFinder
PTI_02G04110.1 No alias Guanine nucleotide-binding protein-like 3, N-terminal... 0.08 OrthoFinder
Sro447_g144970.1 Contig3064.g24419 Nucleolar GTP-binding protein 2 0.08 OrthoFinder
Sro93_g048510.1 Contig3841.g29539 Nucleotide-binding protein-like 3 0.04 OrthoFinder
TP06G02390.1 No alias GTP binding domain; Guanine nucleotide-binding... 0.04 OrthoFinder
TP06G07600.1 No alias Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.05 OrthoFinder
Vocar.0017s0021.1 32891426 Guanine nucleotide-binding protein-like 3, N-terminal... 0.02 OrthoFinder
XM_002501324.1 MICPUN_81269, 81269 GTP binding domain; Nucleolar GTP-binding protein 2,... 0.07 OrthoFinder
XM_003058871.1 MicpuC2_16708, 16708 Nucleolar GTP-binding protein 2, N-terminal domain; GTP... 0.04 OrthoFinder
lcl|BLLF01000432.1_cds_GFH11748.1_6225 HaLaN_07300, GFH11748 CP-type G domain-containing protein 0.02 OrthoFinder
lcl|BLLF01002214.1_cds_GFH23199.1_17676 HaLaN_20779, GFH23199 Nuclear/nucleolar GTPase 2 0.03 OrthoFinder
lcl|LHPG02000020.1_cds_PRW20978.1_4855 PRW20978 Guanine nucleotide-binding-like NSN1 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499037.1_7990 KAA8499037 Nucleolar GTP-binding protein 2 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495697.1_1695 KAA8495697 Guanine nucleotide-binding protein-like NSN1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006073 GTP-bd 275 355
IPR014813 Gnl3_N_dom 20 93
No external refs found!