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  5. Transcript_contig_78124

Transcript_contig_78124 (78124)


Aliases : 78124

Description : NodB homology domain [Interproscan].


Gene families : OG_01_0001088 (OrthoFinder) Phylogenetic Tree(s): OG0001088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78124
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_53976 53976 NodB homology domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56031 56031 NodB homology domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57735 57735 NodB homology domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61361.1_387 PRW61361 Left border a 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61614.1_423 PRW61614 Chitin 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57450.1_9126 PRW57450 Chitin 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56282.1_10029 PRW56282 NodB homology domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39180.1_2682 PRW39180 NodB homology domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33708.1_3198 PRW33708 Polysaccharide deacetylase 0.04 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05840.1_5994 PRW05840 NodB homology domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002509 NODB_dom 207 328
No external refs found!