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  5. Transcript_contig_78049

Transcript_contig_78049 (78049)


Aliases : 78049

Description : Bestrophin/UPF0187 [Interproscan].


Gene families : OG_01_0000064 (OrthoFinder) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78049
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
PTI_05G03790.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
Sro1610_g285770.1 Contig4416.g33182 UPF0187 protein 0.01 OrthoFinder
Vocar.0076s0003.1 32891313 Bestrophin/UPF0187 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51063.1_920 PRW51063 UPF0187 chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR021134 Bestrophin/UPF0187 85 305
No external refs found!