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  5. Cpa|evm.model.tig00000851.31

Cpa|evm.model.tig00000851.31 (tig00000851_g4915.t1)


Aliases : tig00000851_g4915.t1

Description : Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Rhodophyta-specific components.component PsbU


Gene families : OG_01_0006557 (OrthoFinder) Phylogenetic Tree(s): OG0006557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000851.31
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
EOD04610 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.02 OrthoFinder
EOD07444 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.02 OrthoFinder
EOD15138 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.02 OrthoFinder
PTI_04G05040.1 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.03 OrthoFinder
Sro1226_g254250.1 Contig1389.g12816 12 kDa extrinsic protein, chloroplastic 0.03 OrthoFinder
TP02G08090.1 No alias Photosystem II PsbU, oxygen evolving complex [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030076 light-harvesting complex IEP Enrichment
CC GO:0030089 phycobilisome IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR010527 PSII_PsbU 76 164
No external refs found!