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  5. Cpa|evm.model.tig00000842.16

Cpa|evm.model.tig00000842.16 (tig00000842_g4836.t1)


Aliases : tig00000842_g4836.t1

No description available


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000842.16
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001094.33 tig00001094_g7005.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
EOD13723 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
EOD18251 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro66_g037140.1 Contig399.g5384 Protein ligase RNF12 0.01 OrthoFinder
Vocar.0001s0398.1 32884606 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496531.1_260 KAA8496531 E3 ubiquitin-protein ligase RLIM 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496935.1_664 KAA8496935 E3 ubiquitin-protein ligase 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495598.1_1596 KAA8495598 E3 ubiquitin-protein ligase 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495830.1_1828 KAA8495830 Putative E3 ubiquitin-protein ligase RHC1A 0.02 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490863.1_5635 KAA8490863 E3 ubiquitin-protein ligase SDIR1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!