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  5. Cpa|evm.model.tig00000826.24

Cpa|evm.model.tig00000826.24 (tig00000826_g4593.t1)


Aliases : tig00000826_g4593.t1

Description : 40S ribosomal protein S9-1 OS=Arabidopsis thaliana


Gene families : OG_01_0003059 (OrthoFinder) Phylogenetic Tree(s): OG0003059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000826.24
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cre08.g359750 30774125, RPS9 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.08 OrthoFinder
Cz12g07160.t1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.02 OrthoFinder
Dusal.0155s00009.1 33194778 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.02 OrthoFinder
EOD28183 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.04 OrthoFinder
OT_09G02520.1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.02 OrthoFinder
PTI_07G00150.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.05 OrthoFinder
Sro789_g202650.1 Contig1895.g16481 40S ribosomal protein S9 0.04 OrthoFinder
TP04G02460.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.07 OrthoFinder
Transcript_contig_79937 79937 RNA-binding S4 domain [Interproscan]. 0.01 OrthoFinder
Vocar.0064s0040.1 32897709 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.06 OrthoFinder
XM_002500563.1 MICPUN_93744, 93744 RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.06 OrthoFinder
XM_003056738.1 MicpuC2_49506, 49506 RNA-binding S4 domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492735.1_2471 KAA8492735 40S ribosomal protein S9-1 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 107 150
IPR001912 Ribosomal_S4/S9_N 18 62
No external refs found!