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Transcript_contig_61740 (61740)


Aliases : 61740

Description : Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0005332 (OrthoFinder) Phylogenetic Tree(s): OG0005332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_61740
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358250 30773680, MCA1 Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 32 57
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 104 148
No external refs found!