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  5. Transcript_contig_613

Transcript_contig_613 (613)


Aliases : 613

Description : DNA-directed DNA polymerase, family B, exonuclease domain [Interproscan].


Gene families : OG_01_0002052 (OrthoFinder) Phylogenetic Tree(s): OG0002052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_613
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.30 tig00000970_g5849.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cpa|evm.model.tig00000970.31 tig00000970_g5849.t1 DNA polymerase epsilon catalytic subunit A... 0.03 OrthoFinder
Cre03.g179961 30788184 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder
Cz01g29080.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.07 OrthoFinder
Dusal.0146s00025.1 33199498 DNA-directed DNA polymerase, family B, multifunctional... 0.04 OrthoFinder
EOD04907 No alias Hypothetical protein [Ensembl]. 0.03 OrthoFinder
EOD06573 No alias DNA polymerase epsilon catalytic subunit A/1 [Ensembl]. 0.04 OrthoFinder
OT_11G01900.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.07 OrthoFinder
PTI_27G01310.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.06 OrthoFinder
Sro1830_g300310.1 Contig662.g7834 Epsilon catalytic subunit A 0.04 OrthoFinder
TP03G08210.1 No alias DNA-directed DNA polymerase, family B, exonuclease... 0.01 OrthoFinder
XM_002508999.1 MICPUN_63095, 63095 DNA polymerase epsilon, catalytic subunit A, C-terminal;... 0.03 OrthoFinder
XM_003061673.1 MicpuC2_51203, 51203 DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21468.1_15945 HaLaN_18779, GFH21468 DNA polymerase epsilon catalytic subunit 0.04 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21469.1_15946 HaLaN_18780, GFH21469 DNA polymerase epsilon catalytic subunit 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20477.1_5359 PRW20477 DNA polymerase epsilon catalytic subunit A 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 127 458
No external refs found!