Cpa|evm.model.tig00000792.29 (tig00000792_g4178.t1)


Aliases : tig00000792_g4178.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13a component


Gene families : OG_01_0003121 (OrthoFinder) Phylogenetic Tree(s): OG0003121_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000792.29
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre12.g532550 30791692, RPL13a Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder
Cz05g22130.t1 No alias Hypothetical protein 0.12 OrthoFinder
Dusal.0479s00005.1 33193185 Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
EOD25270 No alias Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
EOD35558 No alias Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
OT_12G02420.1 No alias Ribosomal protein L13 [Interproscan]. 0.14 OrthoFinder
PTI_02G04390.1 No alias Ribosomal protein L13 [Interproscan]. 0.41 OrthoFinder
Sro678_g186000.1 Contig2726.g21985 60S ribosomal protein L13a (Fragment) 0.42 OrthoFinder
SymbC1.scaffold1593.4 1593.4 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold2023.2 2023.2 Hypothetical protein 0.02 OrthoFinder
TP04G09050.1 No alias Hypothetical protein 0.37 OrthoFinder
Vocar.0017s0012.1 32891353 Ribosomal protein L13 [Interproscan]. 0.16 OrthoFinder
XM_002507201.1 MICPUN_93104, 93104 Ribosomal protein L13 [Interproscan]. 0.35 OrthoFinder
XM_003054776.1 MicpuC2_30605, 30605 Ribosomal protein L13 [Interproscan]. 0.09 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58824.1_7345 PRW58824 60S ribosomal L13a-4 0.15 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497918.1_6871 KAA8497918 60S ribosomal protein L13a 0.28 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 906 1005
No external refs found!