Transcript_contig_59895 (59895)


Aliases : 59895

Description : Ribosomal protein L18 [Interproscan].


Gene families : OG_01_0004009 (OrthoFinder) Phylogenetic Tree(s): OG0004009_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59895
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
Cre01.g052100 30788991, PRPL18 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
OT_07G04560.1 No alias Ribosomal protein L18 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold436.6 436.6 Ribosomal protein L18 [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0412.1 32884219 Ribosomal protein L18 [Interproscan]. 0.01 OrthoFinder
XM_002503130.1 MICPUN_59217, 59217 Ribosomal protein L18 (RPL18.1) 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56666.1_9892 PRW56666 50S ribosomal L18 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 1 119
No external refs found!