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  5. Transcript_contig_59530

Transcript_contig_59530 (59530)


Aliases : 59530

Description : DNA primase large subunit, eukaryotic/archaeal [Interproscan].


Gene families : OG_01_0003034 (OrthoFinder) Phylogenetic Tree(s): OG0003034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59530
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.68 tig00020848_g14599.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cre06.g293000 30779460, PRI2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder
Cz11g15130.t1 No alias DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.04 OrthoFinder
Dusal.0802s00002.1 33199448 DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.02 OrthoFinder
EOD09588 No alias DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.05 OrthoFinder
OT_11G00950.1 No alias DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.03 OrthoFinder
PTI_11G02500.1 No alias DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.06 OrthoFinder
Sro1384_g268120.1 Contig2234.g18574 Primase large subunit 0.03 OrthoFinder
SymbC1.scaffold5617.4 5617.4 DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001954.1_cds_GFH22038.1_16515 HaLaN_19439, GFH22038 DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002033.1_cds_GFH22403.1_16880 HaLaN_19863, GFH22403 DNA primase large subunit, eukaryotic/archaeal [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01002033.1_cds_GFH22406.1_16883 HaLaN_19866, GFH22406 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493338.1_9639 KAA8493338 Putative DNA primase large subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR007238 DNA_primase_lsu_euk/arc 193 458
No external refs found!