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  5. Transcript_contig_59173

Transcript_contig_59173 (59173)


Aliases : 59173

Description : SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59173
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Cz06g34370.t1 No alias SNF2-related, N-terminal domain; HIRAN domain [Interproscan]. 0.02 OrthoFinder
Cz10g28060.t1 No alias SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.03 OrthoFinder
EOD08047 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD38006 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
Sro535_g161980.1 Contig1610.g14589 Regulator of chromatin subfamily A member 3-like 1 0.01 OrthoFinder
SymbC1.scaffold4407.7 4407.7 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0009317 acetyl-CoA carboxylase complex IEP Enrichment
MF GO:0009916 alternative oxidase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 168 205
No external refs found!