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  5. Transcript_contig_59145

Transcript_contig_59145 (59145)


Aliases : 59145

Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59145
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000480.60 tig00000480_g1327.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cpa|evm.model.tig00020912.17 tig00020912_g15787.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
Cre10.g455300 30789915 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
EOD19002 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
EOD28507 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
PTI_15G00690.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
UNPLg00366.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_003056196.1 MicpuC2_31243, 31243 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
XM_003059126.1 MicpuC2_69519, 69519 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001091.1_cds_GFH17069.1_11546 HaLaN_13613, GFH17069 SnRNP core protein D3 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59229.1_7217 PRW59229 Small nuclear ribonucleo Sm D3 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57070.1_9277 PRW57070 Putative U6 snRNA-associated Sm LSm4 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006623 protein targeting to vacuole IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072665 protein localization to vacuole IEP Enrichment
BP GO:0072666 establishment of protein localization to vacuole IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 6 70
No external refs found!