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  5. Transcript_contig_58933

Transcript_contig_58933 (58933)


Aliases : 58933

Description : Exonuclease, RNase T/DNA polymerase III [Interproscan].


Gene families : OG_01_0004135 (OrthoFinder) Phylogenetic Tree(s): OG0004135_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58933
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cz11g27100.t1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56532.1_9714 PRW56532 Mitochondrial 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 110 231
No external refs found!