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  5. Transcript_contig_58900

Transcript_contig_58900 (58900)


Aliases : 58900

Description : LysM domain [Interproscan].


Gene families : OG_01_0006487 (OrthoFinder) Phylogenetic Tree(s): OG0006487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58900
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
lcl|LHPG02000001.1_cds_PRW61029.1_437 PRW61029 Spore coat assembly domain 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61172.1_436 PRW61172 Lytic transglycosylase 0.03 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20783.1_5005 PRW20783 Lytic transglycosylase 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0005375 copper ion transmembrane transporter activity IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006825 copper ion transport IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016977 chitosanase activity IEP Enrichment
BP GO:0035434 copper ion transmembrane transport IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR018392 LysM_dom 230 274
IPR018392 LysM_dom 31 55
IPR018392 LysM_dom 163 209
IPR018392 LysM_dom 103 133
No external refs found!