Transcript_contig_58808 (58808)

Aliases : 58808

Description : Proliferating cell nuclear antigen, PCNA, C-terminal; Proliferating cell nuclear antigen, PCNA, N-terminal [Interproscan].

Gene families : OG_01_0001486 (OrthoFinder) Phylogenetic Tree(s): OG0001486_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_58808
Cluster	HCCA: Cluster_218

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.141	tig00020553_g10631.t1	Cell cycle.interphase.DNA...	0.01	OrthoFinder
Cz03g35210.t1	No alias	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.01	OrthoFinder
Dusal.0073s00022.1	33194576	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.01	OrthoFinder
OT_06G02920.1	No alias	Proliferating cell nuclear antigen, PCNA, C-terminal;...	0.02	OrthoFinder
Sro844_g209890.1	Contig403.g5454	Proliferating cell nuclear antigen	0.01	OrthoFinder
XM_002500833.1	MICPUN_93665, 93665	Proliferating cell nuclear antigen, PCNA, N-terminal;...	0.02	OrthoFinder
lcl\|BLLF01001941.1_cds_GFH21970.1_16447	HaLaN_19363, GFH21970	Proliferating cell nuclear antigen	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0006605	protein targeting	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0030247	polysaccharide binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:2001070	starch binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR022649	Pr_cel_nuc_antig_C	127	254
IPR022648	Pr_cel_nuc_antig_N	1	123

External Links

No external refs found!