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Aliases : tig00000767_g3963.t1
Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component
Gene families : OG_01_0002549 (OrthoFinder) Phylogenetic Tree(s): OG0002549_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000767.19 | |
| Cluster | HCCA: Cluster_105 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz07g24160.t1 | No alias | CCR4-NOT transcription complex subunit 1, TTP binding... | 0.05 | OrthoFinder | |
| Dusal.0547s00008.1 | 33188676 | CCR4-NOT transcription complex subunit 1, HEAT repeat;... | 0.01 | OrthoFinder | |
| EOD13355 | No alias | CCR4-NOT transcription complex subunit 1, HEAT repeat;... | 0.04 | OrthoFinder | |
| OT_07G03510.1 | No alias | CCR4-NOT transcription complex subunit 1, CAF1-binding... | 0.02 | OrthoFinder | |
| Sro944_g222970.1 | Contig4161.g31789 | CCR4-NOT transcription complex subunit 1 | 0.03 | OrthoFinder | |
| Transcript_contig_54481 | 54481 | CCR4-NOT transcription complex subunit 1, TTP binding... | 0.02 | OrthoFinder | |
| Vocar.0022s0070.1 | 32891945 | CCR4-NOT transcription complex subunit 1, TTP binding... | 0.01 | OrthoFinder | |
| lcl|BLLF01000651.1_cds_GFH13783.1_8260 | HaLaN_09729, GFH13783 | CCR4-NOT transcription complex subunit 1, CAF1-binding... | 0.03 | OrthoFinder | |
| lcl|BLLF01000651.1_cds_GFH13784.1_8261 | HaLaN_09730, GFH13784 | CCR4-NOT transcription complex subunit 1 | 0.06 | OrthoFinder | |
| lcl|LHPG02000003.1_cds_PRW59980.1_6158 | PRW59980 | CCR4-NOT transcription complex subunit 1 isoform X2 | 0.03 | OrthoFinder | |
| lcl|VRMN01000004.1_cds_KAA8494454.1_2984 | KAA8494454 | CCR4-NOT transcription complex subunit 1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000030 | mannosyltransferase activity | IEP | Enrichment |
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006493 | protein O-linked glycosylation | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | Enrichment |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | Enrichment |
| BP | GO:0007010 | cytoskeleton organization | IEP | Enrichment |
| BP | GO:0007051 | spindle organization | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Enrichment |
| MF | GO:0017069 | snRNA binding | IEP | Enrichment |
| MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
| BP | GO:0018298 | protein-chromophore linkage | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0022402 | cell cycle process | IEP | Enrichment |
| CC | GO:0030117 | membrane coat | IEP | Enrichment |
| CC | GO:0030120 | vesicle coat | IEP | Enrichment |
| CC | GO:0030126 | COPI vesicle coat | IEP | Enrichment |
| CC | GO:0030127 | COPII vesicle coat | IEP | Enrichment |
| MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051225 | spindle assembly | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0070925 | organelle assembly | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |