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  5. Transcript_contig_58696

Transcript_contig_58696 (58696)


Aliases : 58696

Description : Hypothetical protein


Gene families : OG_01_0000057 (OrthoFinder) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58696
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.2 tig00021462_g21568.t1 Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz17g01030.t1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
PTI_01G08340.1 No alias PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Sro29_g019230.1 Contig1384.g12766 Linked kinase-associated serine/threonine phosphatase 2C 0.01 OrthoFinder
SymbC1.scaffold8426.1 8426.1 PPM-type phosphatase domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1759.1 32884350 PPM-type phosphatase domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!