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  5. Transcript_contig_58496

Transcript_contig_58496 (58496)


Aliases : 58496

Description : Short-chain dehydrogenase/reductase SDR [Interproscan].


Gene families : OG_01_0000332 (OrthoFinder) Phylogenetic Tree(s): OG0000332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58496
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
EOD34642 No alias Short-chain dehydrogenase/reductase SDR [Interproscan]. 0.02 OrthoFinder
Vocar.0007s0032.1 32888247 Short-chain dehydrogenase/reductase SDR [Interproscan]. 0.02 OrthoFinder
XM_003062958.1 MicpuC2_22144, 22144 Short-chain dehydrogenase/reductase SDR [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05889.1_5930 PRW05889 Short-chain dehydrogenase isoform B 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492837.1_2573 KAA8492837 Putative oxidoreductase 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR002347 SDR_fam 33 130
No external refs found!