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  5. Transcript_contig_58089

Transcript_contig_58089 (58089)


Aliases : 58089

Description : RecF/RecN/SMC, N-terminal [Interproscan].


Gene families : OG_01_0001974 (OrthoFinder) Phylogenetic Tree(s): OG0001974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58089
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
OT_07G02630.1 No alias AAA domain, group 15 [Interproscan]. 0.01 OrthoFinder
XM_002500041.1 MICPUN_65355, 65355 RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39244.1_2687 PRW39244 Structural maintenance of chromosomes 6B-like isoform X1 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20507.1_5421 PRW20507 Structural maintenance of chromosomes 6B isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016843 amine-lyase activity IEP Enrichment
MF GO:0016844 strictosidine synthase activity IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 9 127
No external refs found!