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  5. Transcript_contig_58083

Transcript_contig_58083 (58083)


Aliases : 58083

Description : Kinetochore-Ndc80 subunit Spc24 [Interproscan].


Gene families : OG_01_0003484 (OrthoFinder) Phylogenetic Tree(s): OG0003484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58083
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.73 tig00020961_g16694.t1 No description available 0.03 OrthoFinder
Cre12.g519850 30793077 No description available 0.01 OrthoFinder
EOD13523 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD21908 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
PTI_14G03300.1 No alias Hypothetical protein 0.02 OrthoFinder
Sro1908_g304740.1 Contig1938.g16674 Kinetochore-Ndc80 subunit Spc24 [Interproscan]. 0.02 OrthoFinder
TP04G02560.1 No alias Hypothetical protein 0.01 OrthoFinder
XM_003064273.1 MicpuC2_54210, 54210 Kinetochore-Ndc80 subunit Spc24 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57531.1_9020 PRW57531 Kinetochore Spc24-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013252 Ndc80_Spc24 90 192
No external refs found!