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  5. Transcript_contig_57849

Transcript_contig_57849 (57849)


Aliases : 57849

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003296 (OrthoFinder) Phylogenetic Tree(s): OG0003296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57849
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.75 tig00000144_g9066.t1 No description available 0.05 OrthoFinder
Cre02.g104650 30785421 No description available 0.11 OrthoFinder
Cz10g04070.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
OT_10G02900.1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
PTI_23G00340.1 No alias RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
Sro251_g099260.1 Contig687.g8006 RNA-binding protein 28 0.03 OrthoFinder
Vocar.0020s0164.1 32886730 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002503386.1 MICPUN_101277, 101277 RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
XM_003055646.1 MicpuC2_1653, 1653 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07148.1_1625 HaLaN_01909, GFH07148 Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07149.1_1626 HaLaN_01910, GFH07149 RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57348.1_8998 PRW57348 RNA-binding 28 isoform B 0.1 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57349.1_8999 PRW57349 RNA-binding 28 isoform A 0.1 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493286.1_9587 KAA8493286 RNA-binding protein 28 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 80
IPR000504 RRM_dom 273 341
No external refs found!