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  5. Transcript_contig_57817

Transcript_contig_57817 (57817)


Aliases : 57817

Description : Condensin complex subunit 2/barren [Interproscan].


Gene families : OG_01_0002826 (OrthoFinder) Phylogenetic Tree(s): OG0002826_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57817
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.43 tig00021462_g21606.t1 Cell cycle.mitosis and meiosis.chromatin... 0.01 OrthoFinder
Cre13.g589300 30784001 Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder
Cz08g13030.t1 No alias Condensin complex subunit 2/barren [Interproscan]. 0.06 OrthoFinder
EOD09357 No alias Condensin complex subunit 2/barren [Interproscan]. 0.03 OrthoFinder
OT_16G00210.1 No alias Condensin complex subunit 2/barren [Interproscan]. 0.02 OrthoFinder
PTI_10G00180.1 No alias Condensin complex subunit 2/barren [Interproscan]. 0.03 OrthoFinder
Sro293_g109920.1 Contig3203.g25313 Condensin complex subunit 2 0.02 OrthoFinder
XM_002508713.1 MICPUN_61922, 61922 Condensin complex component, barren domain-containing... 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32517.1_3992 PRW32517 Condensin complex subunit 2 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492811.1_2547 KAA8492811 Condensin complex subunit 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEA Interproscan
BP GO:0007076 mitotic chromosome condensation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR022816 Condensin_barren_su2 25 531
No external refs found!