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  5. Transcript_contig_57569

Transcript_contig_57569 (57569)


Aliases : 57569

Description : Ribosomal RNA methyltransferase FtsJ domain [Interproscan].


Gene families : OG_01_0005765 (OrthoFinder) Phylogenetic Tree(s): OG0005765_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57569
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Cre06.g273150 30778993 No description available 0.02 OrthoFinder
OT_07G03110.1 No alias Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.01 OrthoFinder
TP22G00400.1 No alias Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002877 rRNA_MeTrfase_FtsJ_dom 227 319
No external refs found!