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  5. Transcript_contig_57525

Transcript_contig_57525 (57525)


Aliases : 57525

Description : Nuclear condensin complex subunit 3, C-terminal domain [Interproscan].


Gene families : OG_01_0003764 (OrthoFinder) Phylogenetic Tree(s): OG0003764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57525
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.22 tig00022075_g23586.t1 No description available 0.02 OrthoFinder
Cre08.g362500 30773910 Cell cycle.mitosis and meiosis.chromatin... 0.02 OrthoFinder
Cz08g04190.t1 No alias Nuclear condensin complex subunit 3, C-terminal domain... 0.05 OrthoFinder
EOD10545 No alias Hypothetical protein [Ensembl]. 0.05 OrthoFinder
Vocar.0021s0192.1 32895925 Hypothetical protein 0.03 OrthoFinder
XM_002504601.1 MICPUN_61425, 61425 Condensin complex component, non-smc subunit 0.04 OrthoFinder
XM_003063511.1 MicpuC2_42886, 42886 Condensin complex component, non-smc subunit 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59671.1_6328 PRW59671 ARM repeat superfamily isoform 1 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499172.1_8125 KAA8499172 Condensin complex subunit 3 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR025977 Cnd3_C 548 840
No external refs found!