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  5. Transcript_contig_57299

Transcript_contig_57299 (57299)


Aliases : 57299

Description : tRNA-dihydrouridine synthase [Interproscan].


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57299
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000498.100 tig00000498_g1679.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.01 OrthoFinder
Cre04.g229948 30791118 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.02 OrthoFinder
Cz12g22180.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
PTI_12G00560.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
Sro767_g199550.1 Contig2377.g19543 Synthase 0.01 OrthoFinder
lcl|BLLF01005284.1_cds_GFH31005.1_25482 HaLaN_29949, GFH31005 TRNA-dihydrouridine synthase 3 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61399.1_401 PRW61399 TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 3 208
No external refs found!