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  5. Transcript_contig_57103

Transcript_contig_57103 (57103)


Aliases : 57103

Description : Myb-like DNA-binding domain; Pre-mRNA splicing factor component Cdc5p/Cef1 [Interproscan].


Gene families : OG_01_0002429 (OrthoFinder) Phylogenetic Tree(s): OG0002429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57103
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000737.31 tig00000737_g3811.t1 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder
Cz01g38030.t1 No alias Pre-mRNA splicing factor component Cdc5p/Cef1; Myb-like... 0.03 OrthoFinder
Sro152_g069500.1 Contig69.g710 Cycle 5-like protein 0.01 OrthoFinder
Vocar.0011s0304.1 32895345 Pre-mRNA splicing factor component Cdc5p/Cef1; Myb-like... 0.01 OrthoFinder
lcl|BLLF01001083.1_cds_GFH17011.1_11488 HaLaN_13544, GFH17011 Pre-mRNA splicing factor component Cdc5p/Cef1; Myb-like... 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60453.1_4352 PRW60453 Cell division cycle 5 isoform A 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492334.1_5517 KAA8492334 Pre-mRNA-splicing factor CEF1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR021786 Cdc5p/Cef1_C 455 685
No external refs found!