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  5. Transcript_contig_57014

Transcript_contig_57014 (57014)


Aliases : 57014

Description : RNA recognition motif domain; Cleavage stimulation factor subunit 2, hinge domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57014
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 tig00000402_g193.t1 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder
Cpa|evm.model.tig00000826.12 tig00000826_g4577.t1 Glycine-rich RNA-binding protein 4, mitochondrial... 0.01 OrthoFinder
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.02 OrthoFinder
Dusal.0052s00029.1 33199553 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
TP16G00570.1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0009s0275.1 32893396 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000187.1_cds_GFH08821.1_3298 HaLaN_03852, GFH08821 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01007141.1_cds_GFH32791.1_27268 HaLaN_32072, GFH32791 RRM domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR025742 CSTF2_hinge 160 221
IPR000504 RRM_dom 14 83
No external refs found!