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  5. Transcript_contig_56963

Transcript_contig_56963 (56963)


Aliases : 56963

Description : Proteasome, subunit alpha/beta [Interproscan].


Gene families : OG_01_0001472 (OrthoFinder) Phylogenetic Tree(s): OG0001472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56963
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001098.5 tig00001098_g7056.t1 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder
Cre06.g279000 30779585 Protein degradation.26S proteasome.20S core... 0.05 OrthoFinder
Cre12.g531100 30791746 Protein degradation.26S proteasome.20S core... 0.03 OrthoFinder
Cz16g07050.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
PTI_04G04470.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
Sro209_g087240.1 Contig4070.g31195 Beta type-6-A like protein 0.03 OrthoFinder
TP04G06060.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.02 OrthoFinder
XM_003060786.1 MicpuC2_44601, 44601 Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497752.1_6705 KAA8497752 Proteasome subunit beta type-6 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
CC GO:0000347 THO complex IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 16 159
No external refs found!