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  5. Transcript_contig_56956

Transcript_contig_56956 (56956)


Aliases : 56956

Description : HORMA domain [Interproscan].


Gene families : OG_01_0003413 (OrthoFinder) Phylogenetic Tree(s): OG0003413_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56956
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
EOD04035 No alias HORMA domain [Interproscan]. 0.01 OrthoFinder
PTI_12G00490.1 No alias HORMA domain [Interproscan]. 0.01 OrthoFinder
Sro3109_g343920.1 Contig3616.g27949 Mitotic spindle assembly checkpoint protein MAD2A 0.01 OrthoFinder
XM_003063595.1 MicpuC2_45968, 45968 HORMA domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61319.1_149 PRW61319 DNA-binding HORMA domain-containing 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493070.1_2806 KAA8493070 Mitotic spindle assembly checkpoint protein MAD2A 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR003511 HORMA_dom 17 170
No external refs found!