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  5. Transcript_contig_56883

Transcript_contig_56883 (56883)


Aliases : 56883

Description : Carbohydrate binding module family 20; PPC89 centrosome localisation domain [Interproscan].


Gene families : OG_01_0000144 (OrthoFinder) Phylogenetic Tree(s): OG0000144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56883
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Cre09.g407501 30780213 No description available 0.02 OrthoFinder
Cre11.g467712 30776077 No description available 0.01 OrthoFinder
Cz09g19100.t1 No alias Carbohydrate binding module family 20 [Interproscan]. 0.01 OrthoFinder
Dusal.1172s00002.1 33189202 Carbohydrate binding module family 20 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58235 58235 Carbohydrate binding module family 20 [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1160.1 32885421 Carbohydrate binding module family 20 [Interproscan]. 0.01 OrthoFinder
Vocar.0008s0049.1 32896971 Carbohydrate binding module family 20 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000260.1_cds_GFH09765.1_4242 HaLaN_04969, GFH09765 CBM20 domain-containing protein 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56450.1_9465 PRW56450 Ribonuclease E G chloroplastic 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39079.1_2503 PRW39079 PR-1 0.04 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05780.1_6098 PRW05780 Water chloroplastic-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002044 CBM_fam20 74 164
IPR025925 PPC89_CLD 364 423
No external refs found!