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  5. Transcript_contig_56851

Transcript_contig_56851 (56851)


Aliases : 56851

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56851
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000367.17 tig00000367_g24453.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020943.22 tig00020943_g16264.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00021374.9 tig00021374_g21091.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cre11.g476250 30775659 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cz09g32110.t1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro284_g107920.1 Contig177.g2079 Synovial apoptosis inhibitor 1, synoviolin 0.01 OrthoFinder
Sro524_g159890.1 Contig202.g2386 Receptor homology region, transmembrane domain- and RING... 0.01 OrthoFinder
SymbC1.scaffold1315.2 1315.2 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold510.4 510.4 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0082.1 32884580 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Vocar.0027s0070.1 32887136 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Vocar.0032s0095.1 32893807 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
XM_003055570.1 MicpuC2_38033, 38033 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492818.1_2554 KAA8492818 RING finger protein 24 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0010970 transport along microtubule IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0030705 cytoskeleton-dependent intracellular transport IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0042073 intraciliary transport IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0099111 microtubule-based transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 363 406
No external refs found!