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  5. Transcript_contig_56687

Transcript_contig_56687 (56687)


Aliases : 56687

Description : Minichromosome loss protein Mcl1, middle region; WD40 repeat [Interproscan].


Gene families : OG_01_0001835 (OrthoFinder) Phylogenetic Tree(s): OG0001835_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56687
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.19 tig00020780_g13772.t1 No description available 0.05 OrthoFinder
Cre16.g652950 30777774 No description available 0.07 OrthoFinder
Cz16g01010.t1 No alias Minichromosome loss protein Mcl1, middle region; WD40... 0.1 OrthoFinder
EOD24691 No alias WD40 repeat; Minichromosome loss protein Mcl1, middle... 0.03 OrthoFinder
OT_17G00940.1 No alias Minichromosome loss protein Mcl1, middle region; WD40... 0.08 OrthoFinder
PTI_22G02380.1 No alias Minichromosome loss protein Mcl1, middle region [Interproscan]. 0.06 OrthoFinder
PTI_22G02400.1 No alias Minichromosome loss protein Mcl1, middle region [Interproscan]. 0.05 OrthoFinder
Sro88_g046690.1 Contig265.g3327 WD repeat and HMG-box DNA binding protein 1 0.05 OrthoFinder
TP09G01570.1 No alias Minichromosome loss protein Mcl1, middle region [Interproscan]. 0.03 OrthoFinder
Vocar.0032s0027.1 32893814 Minichromosome loss protein Mcl1, middle region; WD40... 0.02 OrthoFinder
XM_002508806.1 MICPUN_62102, 62102 Minichromosome loss protein Mcl1, middle region; WD40... 0.04 OrthoFinder
XM_003063935.1 MicpuC2_36835, 36835 Minichromosome loss protein Mcl1, middle region; WD40... 0.01 OrthoFinder
lcl|BLLF01000281.1_cds_GFH10023.1_4500 HaLaN_05265, GFH10023 WD_REPEATS_REGION domain-containing protein 0.05 OrthoFinder
lcl|BLLF01001243.1_cds_GFH18062.1_12539 HaLaN_14800, GFH18062 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01001243.1_cds_GFH18063.1_12540 HaLaN_14801, GFH18063 Hypothetical protein 0.04 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33253.1_3523 PRW33253 WD repeat and HMG-box DNA-binding 1 0.06 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490900.1_5672 KAA8490900 Minichromosome loss protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR022100 Mcl1_mid 409 694
IPR001680 WD40_repeat 107 131
IPR001680 WD40_repeat 233 267
No external refs found!