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  5. Transcript_contig_56513

Transcript_contig_56513 (56513)


Aliases : 56513

Description : Exoribonuclease, phosphorolytic domain 1 [Interproscan].


Gene families : OG_01_0000382 (OrthoFinder) Phylogenetic Tree(s): OG0000382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56513
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022080.16 tig00022080_g23800.t1 RNA processing.RNA decay.exosome complex.EXO9 core... 0.01 OrthoFinder
Cre06.g284500 30778491 RNA processing.RNA decay.exosome complex.EXO9 core... 0.01 OrthoFinder
Cre17.g697624 30781907 RNA processing.RNA decay.exosome complex.EXO9 core... 0.03 OrthoFinder
PTI_22G02240.1 No alias Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.02 OrthoFinder
PTI_28G01470.1 No alias Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.02 OrthoFinder
Sro2148_g316530.1 Contig3130.g24839 Complex component RRP41 0.01 OrthoFinder
Sro3366_g347270.1 Contig2665.g21560 Complex component MTR3 0.01 OrthoFinder
TP19G01510.1 No alias Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20484.1_5397 PRW20484 Exosome complex component RRP41-like protein isoform B 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 11 132
No external refs found!