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  5. Transcript_contig_56476

Transcript_contig_56476 (56476)


Aliases : 56476

Description : Nodulin-like [Interproscan].


Gene families : OG_01_0000993 (OrthoFinder) Phylogenetic Tree(s): OG0000993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56476
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
lcl|LHPG02000018.1_cds_PRW32873.1_3812 PRW32873 MFS general substrate transporter 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR010658 Nodulin-like 13 215
No external refs found!