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  5. Transcript_contig_56451

Transcript_contig_56451 (56451)


Aliases : 56451

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0007572 (OrthoFinder) Phylogenetic Tree(s): OG0007572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56451
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Cz03g07050.t1 No alias RNA recognition motif domain; SAP domain [Interproscan]. 0.03 OrthoFinder
Dusal.0207s00015.1 33190108 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000264.1_cds_GFH09796.1_4273 HaLaN_05005, GFH09796 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005516 calmodulin binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0009976 tocopherol cyclase activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 208 266
IPR000504 RRM_dom 312 377
No external refs found!