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  5. Transcript_contig_56399

Transcript_contig_56399 (56399)


Aliases : 56399

Description : Domain of unknown function DUF4033 [Interproscan].


Gene families : OG_01_0000782 (OrthoFinder) Phylogenetic Tree(s): OG0000782_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56399
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001155.3 tig00001155_g7311.t1 Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.01 OrthoFinder
Transcript_contig_89993 89993 Domain of unknown function DUF4033 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60323.1_4305 PRW60323 Beta-carotene isomerase chloroplastic-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR025114 D27-like_C 152 233
No external refs found!