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  5. Transcript_contig_56325

Transcript_contig_56325 (56325)


Aliases : 56325

Description : WD40 repeat; Zinc finger, C3HC4 type (RING finger) [Interproscan].


Gene families : OG_01_0001635 (OrthoFinder) Phylogenetic Tree(s): OG0001635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56325
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Cz05g04250.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0511.1 32884842 WD40 repeat [Interproscan]. 0.01 OrthoFinder
Vocar.0037s0090.1 32897640 WD40 repeat; Signal transduction response regulator,... 0.01 OrthoFinder
XM_002503783.1 MICPUN_59822, 59822 Response regulator receiver/WD40 domain fusion protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005044 scavenger receptor activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 553 590
IPR001680 WD40_repeat 638 673
No external refs found!