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  5. Transcript_contig_56243

Transcript_contig_56243 (56243)


Aliases : 56243

Description : UbiB domain [Interproscan].


Gene families : OG_01_0000167 (OrthoFinder) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56243
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.28 tig00000144_g9017.t1 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cpa|evm.model.tig00000404.56 tig00000404_g418.t1 Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder
Cpa|evm.model.tig00000743.11 tig00000743_g3862.t1 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cpa|evm.model.tig00020660.19 tig00020660_g12512.t1 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cre03.g158500 30787514 Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder
Cre04.g215400 30791004, AKC3 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cre06.g269801 30779971 Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder
Cz12g16050.t1 No alias UbiB domain [Interproscan]. 0.03 OrthoFinder
Cz13g12010.t1 No alias UbiB domain [Interproscan]. 0.02 OrthoFinder
Dusal.0661s00003.1 33199742 UbiB domain [Interproscan]. 0.01 OrthoFinder
OT_06G03160.1 No alias UbiB domain [Interproscan]. 0.02 OrthoFinder
OT_07G02850.1 No alias UbiB domain [Interproscan]. 0.02 OrthoFinder
PTI_11G03080.1 No alias UbiB domain; Aminoglycoside phosphotransferase [Interproscan]. 0.01 OrthoFinder
PTI_16G03130.1 No alias UbiB domain; Aminoglycoside phosphotransferase [Interproscan]. 0.02 OrthoFinder
Sro2015_g311040.1 Contig3461.g26849 Protein kinase UbiB 0.02 OrthoFinder
Sro256_g100760.1 Contig3587.g27721 OF BC1 COMPLEX KINASE 3, chloroplastic 0.02 OrthoFinder
TP07G01160.1 No alias UbiB domain; Aminoglycoside phosphotransferase [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55783 55783 UbiB domain [Interproscan]. 0.01 OrthoFinder
Vocar.0019s0099.1 32892793 UbiB domain [Interproscan]. 0.02 OrthoFinder
XM_002499557.1 MICPUN_78920, 78920 UbiB domain [Interproscan]. 0.02 OrthoFinder
XM_002502095.1 MICPUN_65888, 65888 UbiB domain [Interproscan]. 0.01 OrthoFinder
XM_003058175.1 MicpuC2_45469, 45469 UbiB domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001725.1_cds_GFH20919.1_15396 HaLaN_18126, GFH20919 Protein kinase domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59939.1_6139 PRW59939 Eyespot assembly ABC1 kinase family 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57519.1_9249 PRW57519 Putative aarF domain-containing kinase chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008241 peptidyl-dipeptidase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009411 response to UV IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004147 UbiB_dom 375 492
No external refs found!