Transcript_contig_56242 (56242)

Aliases : 56242

Description : MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].

Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_56242
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.38	tig00000241_g20896.t1	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.05	OrthoFinder
Cpa\|evm.model.tig00020918.5	tig00020918_g15883.t1	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.05	OrthoFinder
Cre03.g178650	30786765, MCM6	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.08	OrthoFinder
Cre10.g455850	30790894, MCM7	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.09	OrthoFinder
Cz01g28090.t1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,...	0.07	OrthoFinder
Cz10g20280.t1	No alias	MCM N-terminal domain; MCM, AAA-lid domain; MCM OB...	0.1	OrthoFinder
EOD16317	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.04	OrthoFinder
EOD19125	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.04	OrthoFinder
EOD29724	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.04	OrthoFinder
OT_01G02550.1	No alias	MCM, AAA-lid domain; MCM OB domain; Mcm6, C-terminal...	0.06	OrthoFinder
OT_05G01710.1	No alias	MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan].	0.03	OrthoFinder
PTI_06G04900.1	No alias	MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan].	0.03	OrthoFinder
Sro397_g134560.1	Contig157.g1794	Helicase MCM9	0.01	OrthoFinder
SymbC1.scaffold9546.2	9546.2	MCM OB domain; MCM domain; MCM N-terminal domain [Interproscan].	0.01	OrthoFinder
TP05G04710.1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan].	0.02	OrthoFinder
Vocar.0015s0342.1	32899062	MCM OB domain; MCM N-terminal domain; Mcm6, C-terminal...	0.04	OrthoFinder
Vocar.0028s0155.1	32895592	MCM, AAA-lid domain; MCM N-terminal domain; MCM OB...	0.04	OrthoFinder
lcl\|BLLF01001170.1_cds_GFH17581.1_12058	HaLaN_14243, GFH17581	DNA replication licensing factor MCM7	0.04	OrthoFinder
lcl\|BLLF01001600.1_cds_GFH20235.1_14712	HaLaN_17325, GFH20235	DNA helicase	0.03	OrthoFinder
lcl\|BLLF01002739.1_cds_GFH25166.1_19643	HaLaN_23090, GFH25166	DNA helicase	0.05	OrthoFinder
lcl\|BLLF01003181.1_cds_GFH26619.1_21096	HaLaN_24796, GFH26619	DNA replication licensing factor MCM7	0.01	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57124.1_9129	PRW57124	DNA replication licensing factor MCM7	0.09	OrthoFinder
lcl\|LHPG02000018.1_cds_PRW33036.1_3726	PRW33036	DNA replication licensing factor Mcm6	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499259.1_8212	KAA8499259	DNA replication licensing factor mcm6	0.04	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493633.1_4395	KAA8493633	DNA replication licensing factor MCM7	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006323	DNA packaging	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
BP	GO:0007076	mitotic chromosome condensation	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment
BP	GO:0010639	negative regulation of organelle organization	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Enrichment
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
BP	GO:0030261	chromosome condensation	IEP	Enrichment
BP	GO:0032780	negative regulation of ATPase activity	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
CC	GO:0042555	MCM complex	IEP	Enrichment
BP	GO:0043086	negative regulation of catalytic activity	IEP	Enrichment
BP	GO:0043462	regulation of ATPase activity	IEP	Enrichment
BP	GO:0044092	negative regulation of molecular function	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
BP	GO:0051095	regulation of helicase activity	IEP	Enrichment
BP	GO:0051097	negative regulation of helicase activity	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051129	negative regulation of cellular component organization	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905774	regulation of DNA helicase activity	IEP	Enrichment
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Enrichment
BP	GO:2001251	negative regulation of chromosome organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR027925	MCM_N	23	141
IPR033762	MCM_OB	148	276
IPR001208	MCM_dom	362	584

External Links

No external refs found!

Transcript_contig_56242 (56242)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation