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Aliases : 56157
Description : Rubisco LSMT, substrate-binding domain [Interproscan].
Gene families : OG_01_0000712 (OrthoFinder) Phylogenetic Tree(s): OG0000712_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Transcript_contig_56157 | |
| Cluster | HCCA: Cluster_233 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre12.g524500 | 30793297, RMT2 | No description available | 0.02 | OrthoFinder | |
| OT_09G03150.1 | No alias | SET domain; Rubisco LSMT, substrate-binding domain... | 0.01 | OrthoFinder | |
| TP14G02290.1 | No alias | Hypothetical protein | 0.01 | OrthoFinder | |
| Vocar.0006s0188.1 | 32894192 | SET domain; Rubisco LSMT, substrate-binding domain... | 0.01 | OrthoFinder | |
| Vocar.0013s0071.1 | 32896420 | Rubisco LSMT, substrate-binding domain [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0037s0009.1 | 32897497 | SET domain; Rubisco LSMT, substrate-binding domain... | 0.02 | OrthoFinder | |
| XM_002508478.1 | MICPUN_97985, 97985 | Set domain protein | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003747 | translation release factor activity | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003856 | 3-dehydroquinate synthase activity | IEP | Enrichment |
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006415 | translational termination | IEP | Enrichment |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Enrichment |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Enrichment |
| BP | GO:0006813 | potassium ion transport | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| MF | GO:0008079 | translation termination factor activity | IEP | Enrichment |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Enrichment |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Enrichment |
| CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Enrichment |
| CC | GO:0009507 | chloroplast | IEP | Enrichment |
| CC | GO:0009536 | plastid | IEP | Enrichment |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Enrichment |
| BP | GO:0016311 | dephosphorylation | IEP | Enrichment |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016791 | phosphatase activity | IEP | Enrichment |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Enrichment |
| MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Enrichment |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Enrichment |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Enrichment |
| BP | GO:0019725 | cellular homeostasis | IEP | Enrichment |
| BP | GO:0022411 | cellular component disassembly | IEP | Enrichment |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Enrichment |
| BP | GO:0042592 | homeostatic process | IEP | Enrichment |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Enrichment |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Enrichment |
| BP | GO:0045454 | cell redox homeostasis | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0065008 | regulation of biological quality | IEP | Enrichment |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR015353 | Rubisco_LSMT_subst-bd | 326 | 443 |
| No external refs found! |