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  5. Transcript_contig_56055

Transcript_contig_56055 (56055)


Aliases : 56055

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56055
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Cre08.g371400 30773476 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
EOD07947 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_04G03910.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold2576.1 2576.1 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Transcript_contig_1388 1388 Hypothetical protein 0.02 OrthoFinder
Vocar.0027s0070.1 32887136 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001468.1_cds_GFH19468.1_13945 HaLaN_16418, GFH19468 RING-type domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496988.1_717 KAA8496988 E3 ubiquitin-protein ligase 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491771.1_4779 KAA8491771 E3 ubiquitin-protein ligase RING1 0.01 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491049.1_9806 KAA8491049 E3 ubiquitin-protein ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 111 154
No external refs found!