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Transcript_contig_56048 (56048)


Aliases : 56048

Description : CobW/HypB/UreG, nucleotide-binding domain; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal [Interproscan].


Gene families : OG_01_0000164 (OrthoFinder) Phylogenetic Tree(s): OG0000164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56048
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
EOD23338 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
OT_07G02270.1 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.01 OrthoFinder
PTI_22G00880.1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder
SymbC1.scaffold157.12 157.12 Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 370 451
IPR003495 CobW/HypB/UreG_dom 11 228
No external refs found!