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  5. Transcript_contig_56045

Transcript_contig_56045 (56045)


Aliases : 56045

Description : 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, D1 domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56045
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
PTI_01G08180.1 No alias Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57356.1_8784 PRW57356 Sorting nexin 2B 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR041385 SH3_12 431 495
IPR040992 XRN1_D1 2 151
No external refs found!