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  5. Transcript_contig_56032

Transcript_contig_56032 (56032)


Aliases : 56032

Description : ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56032
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000655.31 tig00000655_g2857.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre01.g022000 30788870 ATPase family AAA domain-containing protein FIGL1... 0.01 OrthoFinder
Cz03g25090.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Cz04g30150.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
Cz09g21110.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.02 OrthoFinder
Cz16g13090.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
EOD34248 No alias Vps4 oligomerisation, C-terminal; AAA ATPase, AAA+ lid... 0.02 OrthoFinder
EOD34990 No alias ATPase family, AAA domain containing [Ensembl]. 0.01 OrthoFinder
OT_15G01930.1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
PTI_01G09400.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
PTI_31G00050.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.01 OrthoFinder
Sro1909_g304840.1 Contig4171.g31813 Fidgetin-like protein 1 0.01 OrthoFinder
TP01G08640.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation,... 0.01 OrthoFinder
TP01G10410.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
XM_002505303.1 MICPUN_86677, 86677 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499688.1_8641 KAA8499688 ATPase family AAA domain-containing protein 1-A 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 208 248
IPR003959 ATPase_AAA_core 49 186
No external refs found!