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Transcript_contig_56005 (56005)


Aliases : 56005

Description : Surfeit locus 1/Shy1 [Interproscan].


Gene families : OG_01_0003538 (OrthoFinder) Phylogenetic Tree(s): OG0003538_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56005
Cluster HCCA: Cluster_247


Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR002994 Surf1/Shy1 125 285
No external refs found!