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Transcript_contig_55952 (55952)


Aliases : 55952

Description : Zinc finger, CCCH-type; E3 ligase, CCCH-type zinc finger [Interproscan].


Gene families : OG_01_0002730 (OrthoFinder) Phylogenetic Tree(s): OG0002730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55952
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
OT_03G04710.1 No alias Zinc finger, C3HC4 RING-type; E3 ligase, CCCH-type zinc... 0.02 OrthoFinder
Vocar.0002s0599.1 32890756 Zinc finger, RING-type; E3 ligase, CCCH-type zinc... 0.01 OrthoFinder
XM_003054880.1 MicpuC2_13206, 13206 Zinc finger, C3HC4 RING-type; E3 ligase, CCCH-type zinc... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 36 55
IPR000571 Znf_CCCH 7 28
No external refs found!